TEMSET-24K: Densely annotated dataset for indexing multipart endoscopic videos using surgical timeline segmentation

Bilal, Muhammad; Alam, Mahmood; Bapu, Deepashree; Korsgen, Stephan; Lal, Neeraj; Bach, Simon; Hajiyavand, Amir M.; Ali, Muhammed; Soomro, Kamran; Qasim, Iqbal; Capik, Paweł; Khan, Aslam; Khan, Zaheer; Vohra, Hunaid; Caputo, Massimo; Beggs, Andrew D.; Qayyum, Adnan; Qadir, Junaid; Ashraf, Shazad Q.

Abstract

Indexing endoscopic surgical videos is vital in surgical data science, forming the basis for systematic retrospective analysis and clinical performance evaluation. Despite its significance, current video analytics rely on manual indexing, a time-consuming process. Advances in computer vision, particularly deep learning, offer automation potential, yet progress is limited by the lack of publicly available, densely annotated surgical datasets. To address this, we present TEMSET-24K, an open-source dataset comprising 24,306 trans-anal endoscopic microsurgery (TEMS) video microclips. Each clip is meticulously annotated by clinical experts using a novel hierarchical labeling taxonomy encompassing “phase, task, and action” triplets, capturing intricate surgical workflows. To validate this dataset, we benchmarked deep learning models, including transformer-based architectures. Our in silico evaluation demonstrates high accuracy (up to 0.99) and F1 scores (up to 0.99) for key phases like “Setup” and “Suturing.” The STALNet model, tested with ConvNeXt, ViT, and SWIN V2 encoders, consistently segmented well-represented phases. TEMSET-24K provides a critical benchmark, propelling state-of-the-art solutions in surgical data science.

• Journal Article Type: Article
• Acceptance Date: Jul 18, 2025
• Online Publication Date: Aug 14, 2025
• Publication Date: Aug 14, 2025
• Deposit Date: Aug 18, 2025
• Publicly Available Date: Aug 19, 2025
• Journal: Scientific Data
• Electronic ISSN: 2052-4463
• Publisher: Nature Research (part of Springer Nature)
• Peer Reviewed: Peer Reviewed
• Volume: 12
• Issue: 1
• Article Number: 1424
• DOI: https://doi.org/10.1038/s41597-025-05646-w
• Public URL: https://uwe-repository.worktribe.com/output/14823553