Darren M. Reynolds
Visualization of phage genomic data: Comparative genomics and publication-quality diagrams
Reynolds, Darren M.; Turner, Dann; Sutton, J. Mark; Reynolds, Darren M; Sim, Eby M.; Petty, Nicola K.
Authors
Dr Dann Turner Dann2.Turner@uwe.ac.uk
Senior Lecturer in Genomics
J. Mark Sutton
Darren Reynolds Darren.Reynolds@uwe.ac.uk
Professor in Health and Environment
Eby M. Sim
Nicola K. Petty
Contributors
M Clokie
Editor
A. M. Kropinski
Editor
R Lavigne
Editor
Abstract
© 2018, Springer Science+Business Media LLC. The presentation of bacteriophage genomes as diagrams allows the location and organization of features to be communicated in a clear and effective manner. A wide range of software applications are available for the clear and accurate visualization of genomic data. Several of these applications incorporate comparative analysis tools, allowing for insertions, deletions, rearrangements and variations in syntenic regions to be visualized. In this chapter, freely available software and resources for the generation of high-quality graphical maps of bacteriophage genomes are listed and discussed.
Citation
Reynolds, D. M., Turner, D., Sutton, J. M., Reynolds, D. M., Sim, E. M., & Petty, N. K. (2018). Visualization of phage genomic data: Comparative genomics and publication-quality diagrams. In R. Lavigne, A. M. Kropinski, & M. Clokie (Eds.), Bacteriophages. Methods in Molecular Biology (239-260). New York, NY: Springer. https://doi.org/10.1007/978-1-4939-7343-9_18
Publication Date | Jan 1, 2018 |
---|---|
Deposit Date | Nov 24, 2017 |
Publicly Available Date | Mar 28, 2024 |
Print ISSN | 1064-3745 |
Peer Reviewed | Peer Reviewed |
Volume | 1681 |
Pages | 239-260 |
Series Title | Methods in Molecular Biology |
Series Number | 1681 |
Book Title | Bacteriophages. Methods in Molecular Biology |
ISBN | 9781493973439 |
DOI | https://doi.org/10.1007/978-1-4939-7343-9_18 |
Keywords | phage, genomes, comparative genomics, visualization, software |
Public URL | https://uwe-repository.worktribe.com/output/903731 |
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