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Visualization of phage genomic data: Comparative genomics and publication-quality diagrams

Reynolds, Darren M.; Turner, Dann; Sutton, J. Mark; Reynolds, Darren M; Sim, Eby M.; Petty, Nicola K.

Authors

Darren M. Reynolds

J. Mark Sutton

Eby M. Sim

Nicola K. Petty



Contributors

M Clokie
Editor

A. M. Kropinski
Editor

R Lavigne
Editor

Abstract

© 2018, Springer Science+Business Media LLC. The presentation of bacteriophage genomes as diagrams allows the location and organization of features to be communicated in a clear and effective manner. A wide range of software applications are available for the clear and accurate visualization of genomic data. Several of these applications incorporate comparative analysis tools, allowing for insertions, deletions, rearrangements and variations in syntenic regions to be visualized. In this chapter, freely available software and resources for the generation of high-quality graphical maps of bacteriophage genomes are listed and discussed.

Citation

Reynolds, D. M., Turner, D., Sutton, J. M., Reynolds, D. M., Sim, E. M., & Petty, N. K. (2018). Visualization of phage genomic data: Comparative genomics and publication-quality diagrams. In R. Lavigne, A. M. Kropinski, & M. Clokie (Eds.), Bacteriophages. Methods in Molecular Biology (239-260). New York, NY: Springer. https://doi.org/10.1007/978-1-4939-7343-9_18

Publication Date Jan 1, 2018
Deposit Date Nov 24, 2017
Publicly Available Date Mar 28, 2024
Print ISSN 1064-3745
Peer Reviewed Peer Reviewed
Volume 1681
Pages 239-260
Series Title Methods in Molecular Biology
Series Number 1681
Book Title Bacteriophages. Methods in Molecular Biology
ISBN 9781493973439
DOI https://doi.org/10.1007/978-1-4939-7343-9_18
Keywords phage, genomes, comparative genomics, visualization, software
Public URL https://uwe-repository.worktribe.com/output/903731